generate rmarkdown file in output folder
Arguments
- article_dir
path to the directory which contains tex article
- web_dir
option to create a new web directory, default TRUE
- interactive_mode
interactive mode for converting articles with options. default FALSE
Examples
# Note This is a minimal example to execute this function
article_dir <- system.file("examples/article",
package = "texor")
dir.create(your_article_folder <- file.path(tempdir(), "tempdir2"))
x <- file.copy(from = article_dir, to = your_article_folder,recursive = TRUE,)
your_article_path <- xfun::normalize_path(paste(your_article_folder,"article",sep="/"))
texor::include_style_file(your_article_path)
#> [1] TRUE
rebib::aggregate_bibliography(your_article_path)
#> No Bib files found !
#> Cannot aggregate bibliography as there is no BibTeX bibliography
#> No Bib files found !
#> BibTeX file does not exist
#> will parse for bibliography
#> bibtex file created
data <- texor::handle_figures(your_article_path,
texor::get_texfile_name(your_article_path))
#> Found 0 Matches for target : figure\*
#> Changed \begin{figure\*} to \begin{figure}
#> Found 0 Matches for target : figure\*
#> Changed \end{figure\*} to \end{figure}
#> Found 0 Matches for target : widefigure
#> Changed \begin{widefigure} to \begin{figure}
#> Found 0 Matches for target : widefigure
#> Changed \end{widefigure} to \end{figure}
#> Found 0 Matches for target : widefigure\*
#> Changed \begin{widefigure\*} to \begin{figure}
#> Found 0 Matches for target : widefigure\*
#> Changed \end{widefigure\*} to \end{figure}
#> /usr/local/bin/pandoc +RTS -K512m -RTS /private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/RtmpkESNqI/tempdir2/article/RJwrapper.tex --to native --from latex --output /private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/RtmpkESNqI/tempdir2/article/temp-native.txt -s --resource-path /private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/RtmpkESNqI/tempdir2/article/RJwrapper.tex --lua-filter /Users/runner/work/_temp/Library/texor/find_pdf_files.lua
texor::patch_code_env(your_article_path) # Step 4
#> Found 1 Matches for target : example
#> Found 1 Matches for target : example
#> Found 0 Matches for target : example\*
#> Found 0 Matches for target : example\*
#> Found 0 Matches for target : Sin
#> Found 0 Matches for target : Sin
#> Found 0 Matches for target : Sout
#> Found 0 Matches for target : Sout
#> Found 0 Matches for target : Scode
#> Found 0 Matches for target : Scode
#> Found 0 Matches for target : Sinput
#> Found 0 Matches for target : Sinput
#> Found 0 Matches for target : Soutput
#> Found 0 Matches for target : Soutput
#> Found 0 Matches for target : smallverbatim
#> Found 0 Matches for target : smallverbatim
#> Found 0 Matches for target : boxedverbatim
#> Found 0 Matches for target : boxedverbatim
#> Found 0 Matches for target : smallexample
#> Found 0 Matches for target : smallexample
texor::patch_table_env(your_article_path) # Step 5
#> Found 1 Matches for target : table\*
#> Changed \begin{table\*} to \begin{table}
#> Found 1 Matches for target : table\*
#> Changed \end{table*} to \end{table}
#> Found 2 Matches for target : multicolumn
#> changed \multicolumn to \multicolumnx
#> Found 0 Matches for target : widetable
#> Changed \begin{widetable} to \begin{table}
#> Found 0 Matches for target : widetable
#> Changed \end{widetable} to \end{table}
texor::patch_equations(your_article_path) # Step 5.5
texor::patch_figure_env(your_article_path)
#> Found 0 Matches for target : figure\*
#> Changed \begin{figure\*} to \begin{figure}
#> Found 0 Matches for target : figure\*
#> Changed \end{figure\*} to \end{figure}
#> Found 0 Matches for target : widefigure
#> Changed \begin{widefigure} to \begin{figure}
#> Found 0 Matches for target : widefigure
#> Changed \end{widefigure} to \end{figure}
#> Found 0 Matches for target : widefigure\*
#> Changed \begin{widefigure\*} to \begin{figure}
#> Found 0 Matches for target : widefigure\*
#> Changed \end{widefigure\*} to \end{figure}
#> Found 0 Matches for target : algorithm
#> Changed \begin{algorithm} to \begin{figure}
#> Found 0 Matches for target : algorithm
#> Changed \end{algorithm} to \end{figure}
rmarkdown::pandoc_version()
#> [1] ‘3.1.11’
texor::convert_to_markdown(your_article_path)
#> /usr/local/bin/pandoc +RTS -K512m -RTS /private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/RtmpkESNqI/tempdir2/article/RJwrapper.tex --to markdown-simple_tables-pipe_tables-fenced_code_attributes --from latex --output /private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/RtmpkESNqI/tempdir2/article/RJwrapper.md -s --resource-path /private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/RtmpkESNqI/tempdir2/article --lua-filter /Users/runner/work/_temp/Library/texor/issue_checker.lua --lua-filter /Users/runner/work/_temp/Library/texor/abs_filter.lua --lua-filter /Users/runner/work/_temp/Library/texor/bib_filter.lua --lua-filter /Users/runner/work/_temp/Library/texor/equation_filter.lua --lua-filter /Users/runner/work/_temp/Library/texor/image_filter.lua --lua-filter /Users/runner/work/_temp/Library/texor/image_caption.lua --lua-filter /Users/runner/work/_temp/Library/texor/widetable_patcher.lua --lua-filter /Users/runner/work/_temp/Library/texor/R_code.lua --lua-filter /Users/runner/work/_temp/Library/texor/table_caption.lua --lua-filter /Users/runner/work/_temp/Library/texor/conversion_compat_check.lua --lua-filter /Users/runner/work/_temp/Library/texor/bookdown_ref.lua --citeproc
#> Detected the following packages from article:
#> CRAN:
#> Bioconductor:
#> [1] TRUE
texor::generate_rmd(your_article_path)
unlink(your_article_folder,recursive = TRUE)